Wieden, Hans-Joachim: search on Z-Library

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1

Engineering bacterial translation initiation — Do we have all the tools we need?

Vigar, Justin R.J., Wieden, Hans-Joachim

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2017

Language:

english

File:

PDF, 1019 KB

english, 2017

2

A synthetic biology approach to integrative high school STEM training

Dubé, Sutherland, Orr, Doug, Dempsey, Brian, Wieden, Hans-Joachim

Journal:

Nature Biotechnology

Year:

2017

Language:

english

File:

PDF, 365 KB

english, 2017

3

Interaction of Helix D of Elongation Factor Tu with Helices 4 and 5 of Protein L7/12 on the Ribosome

Ute Kothe, Hans-Joachim Wieden, Dagmar Mohr, Marina V. Rodnina

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 1.13 MB

english, 2004

4

Essential Role of Histidine 84 in Elongation Factor Tu for the Chemical Step of GTP Hydrolysis on the Ribosome

Tina Daviter, Hans-Joachim Wieden, Marina V. Rodnina

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 536 KB

english, 2003

5

The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion

Tanzawa, Takehito, Kato, Koji, Girodat, Dylan, Ose, Toyoyuki, Kumakura, Yuki, Wieden, Hans-Joachim, Uchiumi, Toshio, Tanaka, Isao, Yao, Min

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 4.97 MB

english, 2018

6

Construction of a fully active Cys-less elongation factor Tu: Functional role of conserved cysteine 81

Evelina Ines De Laurentiis, Fan Mo, Hans-Joachim Wieden

Journal:

Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics

Year:

2011

Language:

english

File:

PDF, 862 KB

english, 2011

7

To Flash or Not to Flash? Characterization of Fluorescein Arsenical Hairpin (FlAsH) as a Probe for Single-Molecule Fluorescence Spectroscopy

Fernandes, Dennis D., Bamrah, Jasbir, Kailasam, Senthilkumar, Gomes, Gregory-Neal W., Li, Yuchong, Wieden, Hans-Joachim, Gradinaru, Claudiu C.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 42 KB

english, 2018

8

Local Tertiary Structure Probing of Ribonucleoprotein Particles by Nuclease Fusion Proteins

Ohmayer, Uli, Perez-Fernandez, Jorge, Hierlmeier, Thomas, Pöll, Gisela, Williams, Lydia, Griesenbeck, Joachim, Tschochner, Herbert, Milkereit, Philipp, Wieden, Hans-Joachim

Journal:

Year:

2012

Language:

english

File:

PDF, 1.59 MB

english, 2012

9

Site-Specific Cleavage of Ribosomal RNA in Escherichia coli-Based Cell-Free Protein Synthesis Systems

Failmezger, Jurek, Nitschel, Robert, Sánchez-Kopper, Andrés, Kraml, Michael, Siemann-Herzberg, Martin, Wieden, Hans-Joachim

Journal:

Year:

2016

Language:

english

File:

PDF, 2.30 MB

english, 2016

10

Large-Scale Movement of Elongation Factor G and Extensive Conformational Change of the Ribosome during Translocation

Holger Stark, Marina V Rodnina, Hans-Joachim Wieden, Marin van Heel, Wolfgang Wintermeyer

Journal:

Year:

2000

Language:

english

File:

PDF, 343 KB

english, 2000

11

Streamlined purification of fluorescently labeled Escherichia coli phosphate-binding protein (PhoS) suitable for rapid-kinetics applications

Smith, Dustin D., Girodat, Dylan, Wieden, Hans-Joachim, Selinger, L. Brent

Journal:

Analytical Biochemistry

Year:

2017

Language:

english

File:

PDF, 759 KB

english, 2017

12

A Predictive Model of Intein Insertion Site for Use in the Engineering of Molecular Switches

Apgar, James, Ross, Mary, Zuo, Xiao, Dohle, Sarah, Sturtevant, Derek, Shen, Binzhang, de la Vega, Humberto, Lessard, Philip, Lazar, Gabor, Raab, R. Michael, Wieden, Hans-Joachim

Journal:

Year:

2012

Language:

english

File:

PDF, 1.42 MB

english, 2012

13

Interplay of the Bacterial Ribosomal A-Site, S12 Protein Mutations and Paromomycin Binding: A Molecular Dynamics Study

Panecka, Joanna, Mura, Cameron, Trylska, Joanna, Wieden, Hans-Joachim

Journal:

Year:

2014

Language:

english

File:

PDF, 2.30 MB

english, 2014

14

Taking a step back from back-translocation: An integrative view of LepA/EF4's cellular function

Heller, Jalyce L.E., Kamalampeta, Rajashekhar, Wieden, Hans-Joachim

Journal:

Molecular and Cellular Biology

Year:

2017

Language:

english

File:

PDF, 3.59 MB

english, 2017

15

Protein Synthesis in E. coli: Dependence of Codon-Specific Elongation on tRNA Concentration and Codon Usage

Rudorf, Sophia, Lipowsky, Reinhard, Wieden, Hans-Joachim

Journal:

Year:

2015

Language:

english

File:

PDF, 2.51 MB

english, 2015

16

Toward Understanding the Function of the Universally Conserved GTPase HflX from Escherichia coli: A Kinetic Approach

Shields, Michael J., Fischer, Jeffrey J., Wieden, Hans-Joachim

Journal:

Year:

2009

Language:

english

File:

PDF, 2.09 MB

english, 2009

17

Characterization of Fluorescein Arsenical Hairpin (FlAsH) as a Probe for Single-Molecule Fluorescence Spectroscopy

Fernandes, Dennis D., Bamrah, Jasbir, Kailasam, Senthilkumar, Gomes, Gregory-Neal W., Li, Yuchong, Wieden, Hans-Joachim, Gradinaru, Claudiu C.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 5.64 MB

english, 2017

18

Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex

Stark, Holger, Rodnina, Marina V., Wieden, Hans-Joachim, Zemlin, Friedrich, Wintermeyer, Wolfgang, van Heel, Marin

Journal:

Natural Structural Biology

Year:

2002

Language:

english

File:

PDF, 1.01 MB

english, 2002

19

Thermostability of In Vitro Evolved Bacillus subtilis Lipase A: A Network and Dynamics Perspective

Srivastava, Ashutosh, Sinha, Somdatta, Wieden, Hans-Joachim

Journal:

Year:

2014

Language:

english

File:

PDF, 5.09 MB

english, 2014

20

5’-Terminal AUGs in Escherichia coli mRNAs with Shine-Dalgarno Sequences: Identification and Analysis of Their Roles in Non-Canonical Translation Initiation

Beck, Heather J., Fleming, Ian M. C., Janssen, Gary R., Wieden, Hans-Joachim

Journal:

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

21

Non-coding RNAs: what are we missing?

Carvalho Barbosa, Cristina, Calhoun, Sydnee H., Wieden, Hans-Joachim

Journal:

Biochemistry and Cell Biology

Year:

2019

Language:

english

File:

PDF, 847 KB

english, 2019

22

Identification of Two Structural Elements Important for Ribosome-Dependent GTPase Activity of Elongation Factor 4 (EF4/LepA)

De Laurentiis, Evelina Ines, Wieden, Hans-Joachim

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.80 MB

english, 2015

23

The Human WBSCR22 Protein Is Involved in the Biogenesis of the 40S Ribosomal Subunits in Mammalian Cells

Õunap, Kadri, Käsper, Ly, Kurg, Ants, Kurg, Reet, Wieden, Hans-Joachim

Journal:

Year:

2013

Language:

english

File:

PDF, 987 KB

english, 2013

24

Computational Simulation of the Activation Cycle of Gα Subunit in the G Protein Cycle Using an Elastic Network Model

Kim, Min Hyeok, Kim, Young Jin, Kim, Hee Ryung, Jeon, Tae-Joon, Choi, Jae Boong, Chung, Ka Young, Kim, Moon Ki, Wieden, Hans-Joachim

Journal:

Year:

2016

Language:

english

File:

PDF, 6.73 MB

english, 2016

25

Rapid generation of sequence-diverse terminator libraries and their parameterization using quantitative Term-Seq

Hudson, Andrew J, Wieden, Hans-Joachim

Journal:

Synthetic Biology

Year:

2019

File:

PDF, 562 KB

2019

26

Histidine 114 Is Critical for ATP Hydrolysis by the Universally Conserved ATPase YchF

Rosler, Kirsten S., Mercier, Evan, Andrews, Ian C., Wieden, Hans-Joachim

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.97 MB

english, 2015

27

Thermodynamic and Kinetic Insights into Stop Codon Recognition by Release Factor 1

Trappl, Krista, Mathew, Merrill A., Joseph, Simpson, Wieden, Hans-Joachim

Journal:

Year:

2014

Language:

english

File:

PDF, 907 KB

english, 2014

28

Recognition and selection of tRNA in translation

Marina V. Rodnina, Kirill B. Gromadski, Ute Kothe, Hans-Joachim Wieden

Journal:

Year:

2005

Language:

english

File:

PDF, 219 KB

english, 2005

29

A Combined Molecular Dynamics and Rapid Kinetics Approach to Identify Conserved Three-Dimensional Communication Networks in Elongation Factor Tu

Wieden, Hans-Joachim, Mercier, Evan, Gray, John, Steed, Brett, Yawney, Davis

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 629 KB

english, 2010

30

The 70S ribosome modulates the ATPase activity of Escherichia coli YchF

Becker, Marion, Gzyl, Katherine E., Altamirano, Alvin M., Vuong, Anthony, Urbahn, Kirstin, Wieden, Hans-Joachim

Journal:

Year:

2012

Language:

english

File:

PDF, 1.25 MB

english, 2012

31

sdAb-DB: The Single Domain Antibody Database

Wilton, Emily E., Opyr, Michael P., Kailasam, Senthilkumar, Kothe, Ronja F., Wieden, Hans-Joachim

Journal:

ACS Synthetic Biology

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

32

Kinetic Mechanism of Elongation Factor Ts-Catalyzed Nucleotide Exchange in Elongation Factor Tu †

Gromadski, Kirill B., Wieden, Hans-Joachim, Rodnina, Marina V.

Journal:

Year:

2002

Language:

english

File:

PDF, 104 KB

english, 2002

33

The C-terminal Helix of Pseudomonas aeruginosa Elongation Factor Ts Tunes EF-Tu Dynamics to Modulate Nucleotide Exchange

De Laurentiis, Evelina Ines, Mercier, Evan, Wieden, Hans-Joachim

Journal:

Journal of Biological Chemistry

Year:

2016

Language:

english

File:

PDF, 3.96 MB

english, 2016

34

Cellular roles of the human Obg-like ATPase 1 (hOLA1) and its bacterial homologue, YchF.

Balasingam, Nirujah, Brandon, Harland, Ross, Joseph A., Wieden, Hans-Joachim, Thakor, Nehal

Journal:

Biochemistry and Cell Biology

Year:

2019

Language:

english

File:

PDF, 1.03 MB

english, 2019

35

Elongation Factor Tu’s Nucleotide Binding is Governed by a Thermodynamic Landscape Unique Among Bacterial Translation Factors

Girodat, Dylan, Mercier, Evan, Gzyl, Katherine E., Wieden, Hans-Joachim

Journal:

Journal of the American Chemical Society

Year:

2019

File:

PDF, 1.52 MB

2019

36

Loss of m1acp3Î¨ Ribosomal RNA Modification Is a Major Feature of Cancer

Babaian, Artem, Rothe, Katharina, Girodat, Dylan, Minia, Igor, Djondovic, Sara, Milek, Miha, Spencer Miko, Sandra E., Wieden, Hans-Joachim, Landthaler, Markus, Morin, Gregg B., Mager, Dixie L.

Journal:

Year:

2020

File:

PDF, 3.91 MB

2020

37

Viruses, IRESs, and a universal translation initiation mechanism

Roberts, Luc, Wieden, Hans-Joachim

Journal:

Biotechnology and Genetic Engineering Reviews

Year:

2018

Language:

english

File:

PDF, 1.30 MB

english, 2018

38

Elongation Factor Tu’s Nucleotide Binding is Governed by a Thermodynamic Landscape Unique Among Bacterial Translation Factors

Girodat, Dylan, Mercier, Evan, Gzyl, Katherine E., Wieden, Hans-Joachim

Journal:

Journal of the American Chemical Society

Year:

2019

Language:

english

File:

PDF, 1.52 MB

english, 2019

39

Proceedings of the 14th annual RiboWest conference: perspectives and outcome

Thakor, Nehal, Kothe, Ute, Wieden, Hans-Joachim, Patel, Trushar R.

Journal:

Biochemistry and Cell Biology

Year:

2020

File:

PDF, 83 KB

2020

40

A Common Structural Motif in Elongation Factor Ts and Ribosomal Protein L7/12 May Be Involved in the Interaction with Elongation Factor Tu

Hans-Joachim Wieden, Wolfgang Wintermeyer, Marina V. Rodnina

Journal:

Journal of Molecular Evolution

Year:

2001

Language:

english

File:

PDF, 2.29 MB

english, 2001

41

Molecular determinants for 23S rRNA recognition and modification by the E. coli pseudouridine synthase RluE

Tillault, Anne-Sophie, Schultz, Sarah K., Wieden, Hans-Joachim, Kothe, Ute

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 5.21 MB

english, 2018

42

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex

Feng, Shu, Chen, Yun, Gao, Yong-Gui, Wieden, Hans-Joachim

Journal:

Year:

2013

Language:

english

File:

PDF, 9.97 MB

english, 2013

43

Fluorescent Dye Dynamics Attached to EF-Tu and their Effect on a Hetero-FRET System

Kailasam, Senthilkumar, Roberts, Luc, Wieden, Hans-Joachim

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 45 KB

english, 2018

44

Conformations of the Signal Recognition Particle Protein Ffh from Escherichia coli as Determined by FRET

Iwona Buskiewicz, Frank Peske, Hans-Joachim Wieden, Ignacy Gryczynski, Marina V. Rodnina, Wolfgang Wintermeyer

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 562 KB

english, 2005

45

The ABC-F protein EttA gates ribosome entry into the translation elongation cycle

Boël, Grégory, Smith, Paul C, Ning, Wei, Englander, Michael T, Chen, Bo, Hashem, Yaser, Testa, Anthony J, Fischer, Jeffrey J, Wieden, Hans-Joachim, Frank, Joachim, Gonzalez, Ruben L, Hunt, John F

Journal:

Nature Structural and Molecular Biology

Year:

2014

Language:

english

File:

PDF, 3.32 MB

english, 2014

46

In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways

Chao, Yanjie, Li, Lei, Girodat, Dylan, Förstner, Konrad U., Said, Nelly, Corcoran, Colin, Śmiga, Michał, Papenfort, Kai, Reinhardt, Richard, Wieden, Hans-Joachim, Luisi, Ben F., Vogel, Jörg

Journal:

Year:

2017

Language:

english

File:

PDF, 3.22 MB

english, 2017

47

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing

Smith, Andrew M., Jain, Miten, Mulroney, Logan, Garalde, Daniel R., Akeson, Mark, Wieden, Hans-Joachim

Journal:

Year:

2019

Language:

english

File:

PDF, 1.82 MB

english, 2019

48

Introducing a class of standardized and interchangeable parts utilizing programmed ribosomal frameshifts for synthetic biology applications

Brandon, Harland E., Friedt, Jenna R., Glaister, Graeme D., Kharey, Suneet K., Smith, Dustin D., Stinson, Zak K., Wieden, Hans-Joachim

Journal:

Year:

2015

Language:

english

File:

PDF, 770 KB

english, 2015

49

Cellular mRNA recruits the ribosome via eIF3-PABP bridge to initiate internal translation

Thakor, Nehal, Smith, M. Duane, Roberts, Luc, Faye, Mame Daro, Patel, Harshil, Wieden, Hans-Joachim, Cate, Jamie H. D., Holcik, Martin

Journal:

Year:

2016

Language:

english

File:

PDF, 2.05 MB

english, 2016

50

Targeting an Essential GTPase Obg for the Development of Broad-Spectrum Antibiotics

Bonventre, Josephine A., Zielke, Ryszard A., Korotkov, Konstantin V., Sikora, Aleksandra E., Wieden, Hans-Joachim

Journal:

Year:

2016

Language:

english

File:

PDF, 643 KB

english, 2016

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